SNP Profiles matching ICS 1

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
1._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
2._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
3._GC-05-011-1-11	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
4._GC-05-011-1-11	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
5._RUQ_1059	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
6._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
7._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
8._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
9._GC-05-011-1-11	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
10._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	_	AA	GG	CC	AG
11._RUQ_1059	_	GG	GG	CT	_	_	_	TT	_	_	_	_	CC	AG
12._RUQ_952	_	GG	GG	CT	_	_	_	TT	_	_	_	_	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
1._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
2._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
3._GC-05-011-1-11	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
4._GC-05-011-1-11	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
5._RUQ_1059	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
6._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
7._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
8._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
9._GC-05-011-1-11	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
10._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
11._RUQ_1059	_	_	_	_	CC	GG	GG	_	TT	CC	CG	GG	CT	AA
12._RUQ_952	_	_	_	_	CC	GG	GG	_	TT	CC	CG	GG	CT	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
1._PA_121_[PER]	AG	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
2._PA_121_[PER]	AG	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
3._GC-05-011-1-11	AG	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
4._GC-05-011-1-11	AG	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
5._RUQ_1059	AG	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
6._PA_121_[PER]	AG	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
7._PA_121_[PER]	AG	GG	AA	CC	AA	CC	AA	CC	GT	AC	AT	GG	X_X	X_X
8._PA_121_[PER]	AG	GG	AA	CC	AA	CC	AA	_	GT	AC	AT	GG	X_X	X_X
9._GC-05-011-1-11	AG	GG	AA	CC	AA	CC	AA	_	GT	AC	AT	GG	X_X	X_X
10._PA_121_[PER]	AG	GG	AA	CC	AA	_	AA	CC	GT	AC	AT	GG	X_X	X_X
11._RUQ_1059	AG	_	AA	CC	AA	CC	AA	CC	GT	AC	_	_	X_X	X_X
12._RUQ_952	AA	_	AA	CC	GG	CC	AA	CT	GT	AC	_	_	X_X	X_X

Input profile: ICS_1

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

1._PA_121_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 1 > FP

Dapeng Zhang, 2016

2._PA_121_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 3

Dapeng Zhang, 2016

3._PA_121_[PER] GC-05-011-1-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

4._PA_121_[PER] GC-05-011-1-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

Mars, 2018

5._PA_121_[PER] RUQ_1059

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

6._PA_121_[PER]

identical
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P60 102

Dapeng Zhang, 2016

7._PA_121_[PER]

identical
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0233

Dapeng Zhang, 2016

8._PA_121_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 5 > FP

Dapeng Zhang, 2016

9._PA_121_[PER] GC-05-011-1-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

Mars, 2018

10._PA_121_[PER]

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D393

Dapeng Zhang, 2016

11._PA_121_[PER] RUQ_1059

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

12._PA_289_[PER] RUQ_952

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25

SNP Profiles matching ICS 1

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Input profile: ICS_1

1._PA_121_[PER]

identical 40 shared markers

2._PA_121_[PER]

identical 40 shared markers

3._PA_121_[PER] GC-05-011-1-11

identical 40 shared markers

4._PA_121_[PER] GC-05-011-1-11

identical 40 shared markers

5._PA_121_[PER] RUQ_1059

identical 40 shared markers

6._PA_121_[PER]

identical 40 shared markers

7._PA_121_[PER]

identical 40 shared markers

8._PA_121_[PER]

identical 39 shared markers

9._PA_121_[PER] GC-05-011-1-11

identical 39 shared markers

10._PA_121_[PER]

identical 38 shared markers

11._PA_121_[PER] RUQ_1059

identical 24 shared markers

12._PA_289_[PER] RUQ_952

91.7 % 24 shared markers

identical
40 shared markers

identical
40 shared markers

identical
40 shared markers

identical
40 shared markers

identical
40 shared markers

identical
40 shared markers

identical
40 shared markers

identical
39 shared markers

identical
39 shared markers

identical
38 shared markers

identical
24 shared markers

91.7 %
24 shared markers